NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315903_10069822

Scaffold Ga0315903_10069822


Overview

Basic Information
Taxon OID3300032116 Open in IMG/M
Scaffold IDGa0315903_10069822 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3470
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053904Metagenome / Metatranscriptome140N
F058105Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0315903_100698223F058105N/AVNAHPTIISAAKLLKEKWPTCSTWNNDELLNWIGIFNAKRQIGIVMDGDECVGVGAVRFLNSIEESKDIYNDDPNGHIAWIEVVVTSKPMAVQTLWLAMKARCSPNVTKMGGTNVYTGVSRLYDFERYFKLLMNDRICYGRIIQGT
Ga0315903_100698224F053904N/ANDLISRINKTKLDLCDGVFWNNRYLLAVPFVTEDPYILGTENEYSLLTENSIDISLEGALNENNAVIVYHSLARSWLGYWDNWIVNDFIPTSFSNFGPVLMFAGDIISVSAASGQVWSFNDYLPNTRLSPVAASAYLDGGATYESSVITKAYNLNEPIPDKIGYSVQLAFDNPYTTQNVPVSVSYAKDMSGTFSTIDPALNITASQKFLKAYNLISKGRWNTIQFKVNTNSGGRLCLQSTILSGFVDSVRPQQ
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