NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315903_10160418

Scaffold Ga0315903_10160418


Overview

Basic Information
Taxon OID3300032116 Open in IMG/M
Scaffold IDGa0315903_10160418 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2051
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078640Metagenome116Y
F085621Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0315903_101604181F085621AGGAGMGRMKDIAIGLMERADQDCPNDDELRVLMDNFKPSPPRGEPPSPEELQAELDELQAHAVSPPRINLKPEYKVFLLMKNGFPQRSYTDRALAFYECWVCTAGDEVLGAEEPDDWYVVEVMHDESNYTGE
Ga0315903_101604185F078640GGAGGMSWHDDMGYMGAVFMPIDRDKPALPYDEFIVAGGLHPIGDVKGRGGHFYARYEFPNGTNVSVICGSMFYSRIDAPYEVRVDGEEPHGYQTDEDLMILLAKAIGDLK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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