NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315903_10567254

Scaffold Ga0315903_10567254


Overview

Basic Information
Taxon OID3300032116 Open in IMG/M
Scaffold IDGa0315903_10567254 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)880
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008489Metagenome / Metatranscriptome332Y
F091623Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0315903_105672541F091623N/AMPNLTLITLTPPSLPIGYCPTNYQQLANDVISGTQATFNSTIGNSFFNFGASVPTLNNQVYPWLDENGNWWVFQSGYWLRQHPIAAGSAERRIYVGTTVDLQTYDGGNTNTPSLWSGPMWEV
Ga0315903_105672542F008489N/ADGKKEIEWMVQTRAYNFDVPFGLKRLDSGDLFVDSLEGDVSFNVTYRPDQYPGWIEWTDFAECATTTQCLDLCPITNFKPQYRPKMRFPTPSDLPCNETISTPARNLYEVQVMLGIIGYCRIKSLRVHAYDVQEPSVGDCRTAFPACTPLDVCDINPLIYTSESVNP
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