NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316218_1031336

Scaffold Ga0316218_1031336


Overview

Basic Information
Taxon OID3300032117 Open in IMG/M
Scaffold IDGa0316218_1031336 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2448
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025277Metagenome / Metatranscriptome202Y
F063276Metagenome129Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0316218_10313362F063276AGGAMQNSTFRQNLDFFTVMILGIAGVVFAIYWNYTHPHVVVKYDCSISEISPDYPIPVKEACRKLRAENILQSPK
Ga0316218_10313363F070810AGGMETTNTQWEIRIPWHNQNNNWWNETCADVVEIFGLPGERYTYHPRYEYMAFYFNSKKDYQLCKILLSDRI
Ga0316218_10313369F025277N/ANMVINGRDLEERLDTIEKVLNIPERDVILEHKHPKLKELYDAYINALGKYRTFEAIKGEEDAS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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