Scaffold Ga0316218_1071196

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316218_1071196

Scaffold Ga0316218_1071196

Overview

Basic Information
Taxon OID	3300032117 Open in IMG/M
Scaffold ID	Ga0316218_1071196 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1421
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → unclassified Methylococcales → Methylococcales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.0411	Long. (^o)	-89.6861	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010592	Metagenome	301	Y
F078045	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316218_10711961	F078045	N/A	MSYEHFVNNYQRYLKSPRTLSEAVKDAEYCSAITRPKESEYGLLGAVLGALAFVAIFGYGFWLTIGRYA
Ga0316218_10711962	F010592	N/A	MLKPFSQELHNIYDAPARKAVTDWAQMKWGLKVKENPNRYGVDLICFRSDTPVGALEVEVRQPGFDLHRSIHVGQRKEKLFQEGLPTLFFALTQDLSRAYYLKADLIKDCPLVEVHNRYVGKGEMFYDVPITMFKIANLTDVF

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