NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315277_10022808

Scaffold Ga0315277_10022808


Overview

Basic Information
Taxon OID3300032118 Open in IMG/M
Scaffold IDGa0315277_10022808 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7584
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3566Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005740Metagenome / Metatranscriptome391N
F050309Metagenome / Metatranscriptome145Y
F094883Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0315277_100228081F005740N/ALIVQDIRSTIARVVGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRHIETIESVADCCGVGTVRNQWFEFQESGYGLLGESNGGCVGKQLVDRGTVVSYRDMSGETNSYIRVYPGDASDVGKTITLQGVDQNGQWIRTLSGGVWIDGEKLTLALPYVQSTKKFISLTGVIRQATNTSSRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0315277_100228082F094883N/AMPIELGAAILGGAGISAAGSLLGGLFGGKKPKVPELKPIDFAGEQRQAIQQNIASLQPATELAQKTTAAEQSQLEAQLRRAIPGYDQLIAQAGKTIGSRLRGEVDQDVQSQLQRAVAGRAVGGGFKESEGIRTNLLARDFGLTAMQIQNQGLAQAQNFIQQQRMFGMAQPFSISSMFITPAQRIGAIQQQQSAMYGRDLTAAQVAAAPSPMQQSAQTAFTNFGGIAGGSLAQYGMYQGLMQQQPGAYRPPSYNPQNDPEIYPNLYAPSPTRSDITPLSTSLFPEYGSSNYGGNTSSVAPVSTSLFPEYGSSNYRP
Ga0315277_100228085F050309N/AMPRTEILATLRIRLLDRHVRIAEANDDDLVRRILNVHRALLPLTRRVERLVQRHLLALIGITFLGEGGFH
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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