NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315277_10086597

Scaffold Ga0315277_10086597


Overview

Basic Information
Taxon OID3300032118 Open in IMG/M
Scaffold IDGa0315277_10086597 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3553
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3566Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060615Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0315277_100865974F060615N/AMYKIFLQEGKKEDAIQKAKEMFSSPEDAEMINKIFDATSSLGTKFIPFVENETKRYLIDQNTDINDFINLLVNRIRSFIKNNAKITSEVIGTTKELWDGVESRAFPKLDVVLNAPKDINSYNIDTLGYLTQALSMISSKREKEREAKKEAERVFEDGDVVGIRAITHNASCYYGSGTRWCTAGQQPDYFNKYTKDGKLYYFIDKSNRRQKVALFIKDGDPTVYDAADTGHDVDFLYHVYPEVENFVIEKLLGGGKVKSGFERIKDGTISSWNADRVDPLITSYNRDNEDNVTLNLDFNARDNDYFDLFEWNEGDGDRMYLDISLSSYGTGEIFDSYYGEEEWKEGYMYSYFDDEQMKRLQTYMKIINPKLYECTLGLKEYGNDDCRIKVSEFLSKTFENAVDNIISEYTYDMNADTEQGIKEYLERDYSNMFAEYGLPMTGTFYKKTVKLNDLIKTYQKYNPKFNIGIYGLLRRIINLENIDPPSIADSVYEFRTNNYEY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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