NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315277_10209908

Scaffold Ga0315277_10209908


Overview

Basic Information
Taxon OID3300032118 Open in IMG/M
Scaffold IDGa0315277_10209908 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2112
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3566Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023295Metagenome / Metatranscriptome210Y
F048257Metagenome148N
F063343Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0315277_102099081F023295N/AMGCQTRVILVPDGQPVQLAEPVRAKVFAFDATGKPVPSSNKVILPAGWYVLPRK
Ga0315277_102099082F063343N/AMNYLILLGILGLFILGNKVRTNWVSGIKSTLIKLMIPGADRRLFSGFTQSTFSWVRNPASWVRVFNWTGYAAGINGLGGVGGGTLISRRHVLLANHVPYPARPFDIFFANASSRTFTYKVTNVQQVGDTDIAIGTLDRDADPSLNVYRVLPDNWTQYIANKVIQPTATFIAVGLTAPTQAFVLPVLYTGQNRKVSTADVVSILSGLAGVNIPAFETARAFGDPIIGGDSGNPIFAMLGDELVLLGAWYTGPDRGFTVGTFPWLITQRGAIEKIMGMRLQVADMSGLDRIA
Ga0315277_102099083F048257GGAMTAFPSSVAARQCLRGEGCSESVYWVLRRTLLINSGMRFAGERKNTLKKSFYGALAVQAFVMAWTATHMDEPVASLPSGETAIGGNTFEILGTYLTRSAIVGTGLWLGGERKNLLRNTLAGTAMIQATVLLWAQGKEL
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