NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315277_10629078

Scaffold Ga0315277_10629078


Overview

Basic Information
Taxon OID3300032118 Open in IMG/M
Scaffold IDGa0315277_10629078 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1048
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3566Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F008184Metagenome / Metatranscriptome337Y

Sequences

Protein IDFamilyRBSSequence
Ga0315277_106290781F008184AGGMAYTDALNGAIDSLTTSLTAVTGLRVVNDPTKLVPNCVYIDAPSFTTVAGNGNIIRMDFPIKVIGSGPAGLPVLRTILDIVSKVLLS
Ga0315277_106290782F001326GGAGMAVYSVTQKYLLDDYAVLQLLTPSEIAVGQSITVASVDATFNGTYTVRALPQYLYIGIDTEGDLLYDINVPIANQVLYTKVAADVERVAATGTVTYTQTCTWVTGAQLVTYLGVQITDPSDDFTLITQAVSAGNNFAYRRRQEAGYIDSLVTSPGGDQTLGTLMYCAALWRSRGSLENTFASFDGMGTAPQQSLTPIVKQLLGIDRPACA
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