NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310895_10418307

Scaffold Ga0310895_10418307


Overview

Basic Information
Taxon OID3300032122 Open in IMG/M
Scaffold IDGa0310895_10418307 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)660
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059194Metagenome / Metatranscriptome134N
F065761Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0310895_104183071F065761GAGGMKPNASRIERLLAKVEAEVERRWLRARRYVFHPDEVAEAEAQGLPYALLPRVLSKQEWLERYATPGAEAEFYARLRGGPVAFIRPGQTRNASDGLRAKNARPNSSRL
Ga0310895_104183072F059194N/AMRKDFEQNIAGADESDVGPPPRGRSPTARERPFKLGPLGTLNQIIVALGKSIRAMSDGTLDSQVGARICNGLGIMRACLETRKLEQLESRMDEIADRVANERTGAARERTSTHEAQRLSY
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