NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307415_100108557

Scaffold Ga0307415_100108557


Overview

Basic Information
Taxon OID3300032126 Open in IMG/M
Scaffold IDGa0307415_100108557 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2054
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004218Metagenome / Metatranscriptome448Y
F019902Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0307415_1001085572F004218AGGAVAKTYQLDTMVSPSSLLARAKKAAYANGATLLGDEHSGRFSHEMAKGEYRMVGQKVIVTVTDKHWLLPWPVVEAQLRELVL
Ga0307415_1001085573F019902GAGGLREKVLRDLASRAATDAGFLKQVRRDLEGTLAGFGYDLTLEELRLVEDLRRRTAAMSDEQLARTLASGLRARTGTPPARPAAPTWRGSCPGRPARPGG

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