Scaffold Ga0315305_1074369

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315305_1074369

Scaffold Ga0315305_1074369

Overview

Basic Information
Taxon OID	3300032127 Open in IMG/M
Scaffold ID	Ga0315305_1074369 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_Tmax_529 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	894
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	77.9995	Long. (^o)	-150.0065	Alt. (m)		Depth (m)	370
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014327	Metagenome / Metatranscriptome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315305_10743691	F014327	AGG	LKILQGEFSRPTNSVPIADKDVAAYDPNDTGAINKASYQPSSWVKGLPAMSQPLWVQEQMGITQKDEARFQTDTFVKWLRSPSDDVFWKTASAAEVKAMQEETDAEGGFFVPEQFISQTIHDPGVPGSQLRPLCTVVRVSSKDGYVPTMGSATWAAIAEEAAF

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