NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315339_1000812

Scaffold Ga0315339_1000812


Overview

Basic Information
Taxon OID3300032134 Open in IMG/M
Scaffold IDGa0315339_1000812 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Pacific Ocean, United States - ASW #17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33466
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (84.21%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.1202Long. (o)-123.4856Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045425Metagenome153N
F080627Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0315339_100081228F080627N/AMTYATALTAVIARLNAASLVECRAPAGLLGAGAPRGQQAFSVLPIGDRKEKSRGAARTDGLRVAARFTVQLGHELKPSLGLEAPSVGLAALHSAQRYLIQPATTLTTEGAVTFGAVTTTRLGGGSYMVQSFEVAVTFNLDMSAP
Ga0315339_100081229F045425N/AMADLTPYSARWTGPVLLHRGADQTLSVSIEHGGSAPTVSAVTFSLFDSSGTTLLDDVTGSESGGVLSYTILTAITTDKTLGPGYLVRFKATIGGDVHPFYNDAALCLARLYPPIGTSDLTNRYSRLATLQATGASDLQKFVTDAWTELTNKLYSDSLPFWRMRTPSALREWLLTRALVFALRDLGFQLGTGAAYLEEANRLEKKLPGMFGQIRSLMDADEDNQVSQDQQSAGAVLLLSSGRISSWSG
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