Scaffold Ga0315339_1001210

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315339_1001210

Scaffold Ga0315339_1001210

Overview

Basic Information
Taxon OID	3300032134 Open in IMG/M
Scaffold ID	Ga0315339_1001210 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Pacific Ocean, United States - ASW #17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	24353
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (87.18%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.1202	Long. (^o)	-123.4856	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F061276	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315339_100121016	F061276	AGGAG	MPRYITRKVTKFSFVMPVYDYDITLHEDGAHDVMIPCEDRHMVGYNVYGWHYEKQVWKTIGIGGYYEEAKEIADTYDKKMVDKLGVYCDDMGDKKSYG

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