NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315339_1002585

Scaffold Ga0315339_1002585


Overview

Basic Information
Taxon OID3300032134 Open in IMG/M
Scaffold IDGa0315339_1002585 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Pacific Ocean, United States - ASW #17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13615
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.1202Long. (o)-123.4856Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049694Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0315339_10025857F049694N/AMAMTKRYDHANEERYGAAIEALDAAGKTSSAEALAAARWKQT
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