NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316201_11013745

Scaffold Ga0316201_11013745


Overview

Basic Information
Taxon OID3300032136 Open in IMG/M
Scaffold IDGa0316201_11013745 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7869Long. (o)-75.1074Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064767Metagenome / Metatranscriptome128N
F095283Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0316201_110137452F095283AGGAVPKTKAQLNRQMRQEGLRDFLSKQKLIEKVIDIAQNLTDPDKEYDALDVQRMRTAAELNLKLAAKVLPDLKSTEISGPDGGDLVGAVQRKRFDGDD
Ga0316201_110137454F064767N/AMDIDEYIIAVRAADSMSKAWRSDVAILSNLKIVRLENARGTILEIVRWDL

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