NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315910_11221918

Scaffold Ga0315910_11221918


Overview

Basic Information
Taxon OID3300032144 Open in IMG/M
Scaffold IDGa0315910_11221918 Open in IMG/M
Source Dataset NameGarden soil microbial communities collected in Santa Monica, California, United States - Edamame soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)587
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.0136Long. (o)-118.4673Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102684Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0315910_112219181F102684GAGMESFKAVALGTLGFASCLSLLLVAGRLTVRWHRVVICLVAMQGLFLQGALWRGVTCTLKRFDVGGSYFWLHAAFVTSVVGMVWALIVLGVTFYSRRPTD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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