NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314779_1026076

Scaffold Ga0314779_1026076


Overview

Basic Information
Taxon OID3300032150 Open in IMG/M
Scaffold IDGa0314779_1026076 Open in IMG/M
Source Dataset NameMetatranscriptome of sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB 2018 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)578
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.473Long. (o)-156.7294Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000991Metagenome / Metatranscriptome811Y

Sequences

Protein IDFamilyRBSSequence
Ga0314779_10260761F000991N/AALLGLATAIKVKDNSDPLGRNADKTQHTEMHVSGYNGADEDEIMDNIFSRFSKEGQTPAGHKTGQKLLMKDEAKLAAGTVLEAAHKLAPSEVPAYLAQNFESTWNYFDQNHEGWIRYEESHVFMRHLQGKLNKFNGAPGTITDLSTGGVAYVLPFPQGSEATPVGQV
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