NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315295_10818551

Scaffold Ga0315295_10818551


Overview

Basic Information
Taxon OID3300032156 Open in IMG/M
Scaffold IDGa0315295_10818551 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)934
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5367Long. (o)-110.4246Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001586Metagenome / Metatranscriptome667Y
F003290Metagenome / Metatranscriptome495Y

Sequences

Protein IDFamilyRBSSequence
Ga0315295_108185511F003290AGGAGGMSNPTTPFSWQMPTAVDLVTDLPADFEVFGQAVATSMADLLGGASGYILSKASATDMDFA
Ga0315295_108185512F001586N/AGEIDQPGNYELAQRSSSRTDVYSLVAALASSGLGYIYEDANGQIGYADSTHRTNYLAANGYVDLTANHALASGLSIQSRTGDVRNNITIKYGQNSNSETDASDSVSIGLYGQLSQIFTTTLKHLADANDQAAFYLALRAYPQFNFNNITFELTNPELDDADRDDLINVFMGMPVDISDLPLNMVSGDFLGFVEGWTFTAAYNQVSVSMILSPISYSLQAMRWNDVPITEQYNTVNPTLDWINATIVA
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