NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268251_10003968

Scaffold Ga0268251_10003968


Overview

Basic Information
Taxon OID3300032159 Open in IMG/M
Scaffold IDGa0268251_10003968 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3956
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003229Metagenome / Metatranscriptome499Y
F006197Metagenome379Y

Sequences

Protein IDFamilyRBSSequence
Ga0268251_100039682F003229AGGAGVRHHQPTTTVAILGCDTVVGRSLSVLLEGSGYETTLLDAYPTGVVDELLEGAHLLLLTPRVDEGVREAFLGAMGKRVPRMAEMPVIALHTALEEDLPEKEGVISVSWPCETSVLVDRIEAALLDVPAASTSSTTQSGTG
Ga0268251_100039683F006197GGAMRLVGGTGAFRNPRLPSGYSLDRSDPDVLVLRCPHGKAIARFSAQGAKAEAIEREAKAHYRERNRSA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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