NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268251_10005618

Scaffold Ga0268251_10005618


Overview

Basic Information
Taxon OID3300032159 Open in IMG/M
Scaffold IDGa0268251_10005618 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3366
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004425Metagenome438Y
F016368Metagenome / Metatranscriptome247Y
F036415Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0268251_100056181F036415AGGAGGVGEQRLLQKYRPGDEIDMVVYIEHAPMRLREVSARFFSQGQDEGGIISHMDLSGTPSINKDQPSQQVQATLQSEVRLSARVDPDGAPGVYRLNRLTVKTYGGREHHYSAEELDEMGFEIVEEPNNRPVVLQIEMGFRTDY
Ga0268251_100056183F016368AGGAGGMTGLVVLNAHKVNKVLPPGYRVDHDPDVAVLRRSDGSVVGYFPIWSMNPKRLLQEAKLDLASERLANS
Ga0268251_100056187F004425AGGMNATQLLPAIRDLCPRLPEYFHHEPWELAHVLFSLGFVEALAGEPEIDAAVEVARQDWPLWRSAA
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