NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268251_10012969

Scaffold Ga0268251_10012969


Overview

Basic Information
Taxon OID3300032159 Open in IMG/M
Scaffold IDGa0268251_10012969 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2353
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009855Metagenome312Y
F080473Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0268251_100129691F009855GGAMHPHLDREAIVRDIETTRYGRDYAGRRGKITHVDKDPQTGAATGYILRMEEEGGNEVRFESEEIHIIEAWD
Ga0268251_100129692F080473GGCGGVEQPEEKNVRSLAESVLFYAGIPAALLYPLGVLAVGIQLWLDPLFPYVRLDTVWIAVSLIPERVLIGTGIRLLLFALLSTAFAIGVSVLLVRGLILLGRRPAEASAVLPGRRGWMLYLLLLIPLAVVVLWSSVRVNSATEFAYFIGFFVFSAAAGLVFGYVRWASTAEHFYVTMVTAYLGGVAAAICLAATQTPPLPLVETRADRNVTLTCSKVSAEDMFVMLDRGDSYLYLYNKEGLLSLPEGDAETVRFRECQGYLDRD
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