NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268251_10012975

Scaffold Ga0268251_10012975


Overview

Basic Information
Taxon OID3300032159 Open in IMG/M
Scaffold IDGa0268251_10012975 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2352
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001245Metagenome / Metatranscriptome737Y
F057658Metagenome136N
F085252Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0268251_100129751F085252GAGGMAAGSSLESWVGQYVSVELAADPGSEGSIAILRGGGLEARLEGVSEYGLMLLMVRYDELEDKRIEYNRFYPWAQVRSVGLLEPQPEPS
Ga0268251_100129755F001245AGGAGMSEKALGMLMHMRRQIFGHPAPYVEVRGAAVSIGVEPGGSECDGLVDELLQAGYIRRYPSPSLTAHGLYRLTDLGIGAAKEAAAQEG
Ga0268251_100129756F057658AGGMDDNHRIAEQRAREMETARPQGTDEAVQGRMARLDVSQELARYLLDLETRIWELEMDLKELKQRPN
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