NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0268251_10025279

Scaffold Ga0268251_10025279


Overview

Basic Information
Taxon OID3300032159 Open in IMG/M
Scaffold IDGa0268251_10025279 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1800
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006538Metagenome370Y
F012324Metagenome281Y
F067090Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0268251_100252791F067090AGGAGGMTRVLHWRGVAWLLACTLVVMMAATLLSTQRAEADTIHDVVSQTWPDPLVPTAEQIAYHEGGGIVNDGYCGWGMLPSTQALLGMPYGMTDDPYYCSAKAYELYRMYGWAPWTTYGWYTPGAGQTPITYW
Ga0268251_100252793F012324GAGGMGSEQTRLPPGYRLDKSDPDVWALRRPEGWVVAHFSARGAAKEAIEQTAWEDYGGAGEEEYP
Ga0268251_100252794F006538GGAGMPCELCGRGDMWIKTCRTPEGSRLVVCDPCYEENALVLVSVPGDISVTARCDTYWCYDNPRDFVEISPGGRKNAYSGTCAGCAEERS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.