NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268251_10027464

Scaffold Ga0268251_10027464


Overview

Basic Information
Taxon OID3300032159 Open in IMG/M
Scaffold IDGa0268251_10027464 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1740
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006339Metagenome375Y
F020315Metagenome / Metatranscriptome224Y
F057109Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0268251_100274641F057109AGGAGGVGENPDSEREEVPGRPAVSPQNTREQAKEGKEQRAEEGRGDPATRLRLFVRRFFGR
Ga0268251_100274642F020315GGAGGVDERSLQLLKVMREQVGETTGRTVDAGAAAKSLGMYPETLDRSLLYLVRAGYIEEYADRAMSSRNGMFLITLQGIAAIDNA
Ga0268251_100274643F006339AGGAGGMQNDQTTQEDAKRLLVAMSTNHSEARMVSPYGLHRPFSPSWADAEQAGLDRVRRDAAMWWLIENNLLERQGEAENLRDKGKGVPDYDYVYGSVFRITDDGRELLEEIWEEQRHQ

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