NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268251_10028906

Scaffold Ga0268251_10028906


Overview

Basic Information
Taxon OID3300032159 Open in IMG/M
Scaffold IDGa0268251_10028906 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1705
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013355Metagenome / Metatranscriptome272Y
F085252Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0268251_100289061F013355GGAGGVATTTITKQYFEDLGRIAESNAKSAQESARIATEYWVASRERNNKVAQEVAHTITEGMRHQTDANEEITSKIFEILEERDEAHKRFFEQWAEAFTSVPFDFARQATREAQKGHTRVGS
Ga0268251_100289062F085252GAGGMAAGSSLESWVGHSVSVELAADPGSEGSIAILRGGGLEARLEGVSEYGLILLMVRYDELEDERKEYNRFYPWAQVRSVGLLDPQPEPS
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