NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10000040

Scaffold Ga0311301_10000040


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10000040 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)390058
Total Scaffold Genes348 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)250 (71.84%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035010Metagenome / Metatranscriptome173Y
F063538Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_10000040341F035010N/AMTATAKYLMLLSYLALTLGVAMESKTQARPPQILEIYRDYLKPDAIAANRKLERRAEDLCRTLGFTHPYLTIESVSGHAEMWYLNGFDSEAEVEKLRREYQLNTKLLAALDDITRQKVPLKRFESTDEFANYRPDLSRGDPWIIGRGQFFVIVLFVGDPPMNGTVFEMKDGSRILVRTTQTASEARALAASAGSIARVFQSFFYFRPKTL
Ga0311301_10000040343F063538N/AMKVRPVIIDGNTDRWELVACHETLGEFAIDDNDGLADPALTLFILEVRDVTIPPIERRFLPNKGWKRMTTSQCLALLESAGVIDRQRA
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