Basic Information | |
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Taxon OID | 3300032160 Open in IMG/M |
Scaffold ID | Ga0311301_10000275 Open in IMG/M |
Source Dataset Name | Sb_50d combined assembly (MetaSPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 186279 |
Total Scaffold Genes | 134 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 113 (84.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.1318 | Long. (o) | 11.881 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001589 | Metagenome / Metatranscriptome | 667 | Y |
F011955 | Metagenome / Metatranscriptome | 285 | Y |
F026629 | Metagenome | 197 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0311301_1000027522 | F011955 | AGGAGG | MSARSPIPGPRTLHAELVALSEQDVTEVASFIALQSGRTAEAVEAHLRWFLLENPARQPQYPVGFGLRSTDQLVGCILCSPQAFRFGSNRILLMGSSSFFVDERYRGHGGRIFLQYSRLANQLPLFGTSANAEAAALWKAAGASPIPYFDGELFGVLHWPPVAEEFVHRRYSSPLLSRLAGSPVANLAKLFRPLKLNVGKSEALRPLTSAEQVNDLDIHDPSAKLTALRDLAYIRWRYFSGRDATVAAFAFRSRQPDQEVLVTVNQRTRGYRDQIKTLNVLDVYPEAPAEECLRIVEALVARYRSSIDTVVLRGQNPDQREVFCQRGFQLRVFDAPNGWFLDRAKLLPTHDWYAVPADGDGLI |
Ga0311301_1000027544 | F026629 | N/A | MKILLIHSEDDPEKGPWADLAWDRIVDLGLGGVNGYERWTRRFRCPVTTLDPLRNRFDDFRRIRALLGQGCGRLIDEYGLDWWEILSMLLHGDLETLIVLQRFAQTVGSDDEVYVSRPGLQASLLQCLLGNRANVFPLRCGAQKGGLGHYVRVSQKLSASQMIDVFWDKYDAGYQFRGRLVGRRAPSSRPVVLLPTAYVNVSRTGIACANTFPEENFLLVATRRSGWAQDPPKNVAARWLSAYASVRDRSAENAEGERRWRPLRKELQGTTEFEILNTLGHLDSFPRWFRHGLEVRDAWRNVLDTEPVQAVLCADDSNPYTRLPMLLAQARGLPNIACHHGALDGRAVFKRSYGDVIWAKGKMEEDYLVRRCGVPPERVEIAAPALPANWNAWRRSNLHEPQPYLLFISEAYDVAGGRAEEFYRDVLPPLADLALATGRKLIVKLHPAESERDRAGMVARILSAEQNGATRIVSGPLTEDLLRKAWFGITILSTVAMECAIRGIPCFLCKWLEFSPYGYVDQFIRFGVGISLNDPSELKRIPEYLQQTPAHAEVSKNCWQPASAGRLRELLTSSQSLHEGKALSCRQNVRQSCG |
Ga0311301_100002756 | F001589 | N/A | MRKSFIFVLCAVTMLLLSSCSPRDFLTRRLAADLIAGSETFRASQQFQLRTGVVANKDYLSPEYIGLQHHGWISATNASCPAALAPPPCWNVTLTPSGVDTLQSLIPPGDDENQSFTIPAARRELVAITGISKQGNVASVEFTWRWVPLNEVGAVIYPGDLRYRSTASFRCYDDGWRIAQGAPHPAQTFDEALKNAEPAP |
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