NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10000778

Scaffold Ga0311301_10000778


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10000778 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)123256
Total Scaffold Genes124 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)104 (83.87%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001010Metagenome / Metatranscriptome807Y
F002288Metagenome / Metatranscriptome574Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_10000778111F001010AGGAMQNTGDPRARGEIVAVIEHVLSDRTGEWRVSIVGSHANDNWEMKVEGPEGFERSYTLVGGAGEHEPAAIGNLVVKLLPARKP
Ga0311301_10000778124F002288N/ACVDGPGTLTAIRTQPPEGSSMGEADGVHKRRMFRWPKEARELVREYKERTSRSQEHNETGRRMLVTKLAAISGNPRDACLRFLRELGVNQKRAYREWTKPEQQRLLDLITAMPVEEAAKILRRPAGSVRSMLHRLGIGGKTGREWFTKFSLSRALHTRPDEIQKWIDLGWLKSRTLATAGTKANIIHADDFCQFVKEHGRAVASRRLTYEALWFVQTYVFPPSHAELLSVRGTYKRHDAGDETDPNRESQSACGSEEDGGQEG
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