NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10000988

Scaffold Ga0311301_10000988


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10000988 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)108958
Total Scaffold Genes113 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)80 (70.80%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006317Metagenome / Metatranscriptome376Y
F016557Metagenome / Metatranscriptome246Y
F073809Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1000098827F073809AGGTGGMLAGAIAAVLLVFALFLSMLSSSPKDDAEWHPDTEA
Ga0311301_1000098852F016557GGAMAKFKSAGSKKTSEKVKSARAAVPCLVLVALGVALICLLFYLSLQSNTQ
Ga0311301_100009886F006317GAGGMTRHMYVFCCLVLAGCSSKPPVKPAAAAPDKIQGKAQVVLTETNALDTSLNAGGPSVYLLVDGLNRYRLFFNKASQVDPGKEYIAEGVYAQKAIDAMGDPDQGKNGYPLESSCDTVVRTAWPGLSFDMTDSYSASLRAKVKRYPARPVFLVTRIEPVTGDAASAKQKKDDEAAEKEAPTVSVPADKQRALLVEGPTVLPAPLWEPTGGTVRCKVGIDEKGKIVELNSGAQLCETVPWSQFSYKPTVKGGHPARVDTEVEVRFDPRK
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