NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311301_10004581

Scaffold Ga0311301_10004581


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10004581 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49454
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (73.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008191Metagenome / Metatranscriptome337Y
F092660Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1000458115F008191AGGAMAVTGKFVCAGCRWWHYHPTEGAEPGSEQAVGYCRRFPPARRENGVGAWPITFGSDWCGEFTDKAQVSWPISRVAPSH
Ga0311301_1000458142F092660N/AMTAVFTIFTFLPTSAFAGLDGINWHSEQDYISAHGRLELTSNSKFCTFIDKLECKVREPGKLPIYYLLECDRNRRICEAVSAKLLRGEPWLVKQEYRITEWDAGHVSASMKDPPYQCLVAGLRADLDGREVVFTETYTKSIENDAFCVPENVGHTTTYKLENY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.