NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10006860

Scaffold Ga0311301_10006860


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10006860 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38754
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017104Metagenome / Metatranscriptome242Y
F029086Metagenome / Metatranscriptome189Y
F066943Metagenome126Y
F073174Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1000686010F017104GAGGMSRYHQIKDATAEVIGVRVVKRTSTAKAHAAVRDLIIENPALSYEQIAVLLGCSRWLVYKVAVEFDVRRPRGAGSPARRKEQQ
Ga0311301_1000686013F073174N/AMNNPDNPEVLAVIPLPTPEERTRREITLARLMLLAIDHVLSGEGLRLDTARDLIREVRHVYPELAAEWDEI
Ga0311301_1000686018F029086GGAGMNQLAESVFELSDEEILAEVRESGADPEQEAERTRLVLRQASKAFDNVNNRLSNLGHSINSNDWRSGQGSYHNNCLNCGSSVSFTATGEMRGDDLGGSCPENGYTTKKREASR
Ga0311301_100068609F066943AGGAGMKRRKYFGWEQAFEFIWRHADREGMWLGDAATLAAEFDASEQAADDVLDELRDRRLIEKLDAGTFFISGWREKDEIEEREP
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