Basic Information | |
---|---|
Taxon OID | 3300032160 Open in IMG/M |
Scaffold ID | Ga0311301_10007581 Open in IMG/M |
Source Dataset Name | Sb_50d combined assembly (MetaSPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 36361 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (74.36%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.1318 | Long. (o) | 11.881 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002729 | Metagenome / Metatranscriptome | 534 | Y |
F029544 | Metagenome / Metatranscriptome | 188 | Y |
F052774 | Metagenome / Metatranscriptome | 142 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0311301_1000758127 | F002729 | GGA | MTYEPVYERFEVRGPDGNLREVHFVRAGFLTQGDRPELFFFRVNGEETVVGISGLSLARFERGRRRLSREQKIDFTGLWLKRQMEAGLHLDSRSLYIQDDELANLASEFDFTE |
Ga0311301_100075818 | F029544 | N/A | MDRETQFANELQTLRALCDEAIPREERLRLMQSLCQHVFLEPEHQVVSESIRALFPRGPFSVEQLRVHLNNRGFPDTDVEKYFHPAQDAGVEHRPADKLAP |
Ga0311301_100075819 | F052774 | GGA | MTAKSTSEHGFSNTLTIFFLSVAAIAVALLFFGGALRRLVRESLMQRVTSAHYEILSPPGALTHDAMTEFAANREPLFTALDKKLGGADSNRNIRIVFDPKYAGASPDDTGQQSYTVTGMTIRTKPNGRKPQLPAAADAEALLYAAWGQPGNAQLARWTANWLVGQWRGAEIGMAAAGVEQRLGHKKLASLLSDPGGEISSPDDRTLLGAAWISEIAEFGGAGAVRKLYSAQMPHPNVAEVTKTLGTTPLELDRKWQLWMYAYLAGMPSMQHDSAMPMSMPMAGSH |
⦗Top⦘ |