NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10008204

Scaffold Ga0311301_10008204


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10008204 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34542
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001010Metagenome / Metatranscriptome807Y
F002004Metagenome / Metatranscriptome605Y
F068013Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1000820449F068013GAGGMSRYKDGKFEERLVRCRDRVLTAWACAALLRPDLSPAGKEKLAKRILKMAESKDLRLAITPAQAQEIVLSNVQCIAKNCPMLLFSEPLSRELNLYFGEE
Ga0311301_1000820458F001010GGAGVAIEMQNTGDSRARREILAGVEHVLSDMAGEWRVSIVGSRANDNWEMKVEGPRGFERSYTLVGEAGEHQPEAIRNVLIKLLPASAR
Ga0311301_1000820459F002004GGTGGMKKIPNSSRRLSEHILRALNKIKRPSTAGEITELLNGDLDREDSPFQAKDVAEWLRNTEDMALTLYWSRVRPRK
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