NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311301_10011220

Scaffold Ga0311301_10011220


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10011220 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28411
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (51.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000780Metagenome / Metatranscriptome895Y
F001734Metagenome / Metatranscriptome644Y
F021136Metagenome / Metatranscriptome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1001122012F000780N/AMDRQIENGKAGVGAEAGTKKGAKQPHRSRHLMCRTPLWGVAGFLGCAYFTWVSFARVAQNDYDWPHDLWTAATYIVWILLLAGLALDTRCLRERLFFGLLVINFVVGCGLTLWQSIPSADVRTARIGTGALWALAALVSLTTLERASRPRRSH
Ga0311301_1001122018F001734N/AVDPLSAHVSLSDTEIMRSRFPSLRLVAPVVLIVVLFAPLPASAQDAQDDDPSLGDLARDLRKNKAQQQPQPQPDADHPGPAHTVIDNDNLAQIMEDAKNARPAKQDKTVFSIDTASNTLKVSSPDVTCSLSFNARASSLLIKPVLIEDLPLAELLKLDGPGSIQDESLQLQVFNGTDWDIREITVGLTLERKPGEDVEAAARARVIPAAQGMAPVAVERRSDVTLLYHLKAEAKPFSTTAFHENIGITPGPEEDWRWSIVEAKGIRPAQK
Ga0311301_100112206F021136GGAGMVGIVAFHILMLLLGLIIVSRAVAVERVSNALGYLHKTIGITTPSPAQVRMVALIWIGSVIIIVDGCLFLLLLITKLSNPG

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.