NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10025846

Scaffold Ga0311301_10025846


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10025846 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15814
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013101Metagenome / Metatranscriptome274Y
F052739Metagenome / Metatranscriptome142Y
F087613Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1002584613F052739GAGVKKATMPEAPPKVYPNKRISRRAKIARPVRVRPSDPKDDHFEDLPVSVNASKDGIYFTSRRKSYYKGMRVFVTFPFSSPHDPMNSEYVAEVVRVEEMPNGKTGVAVHFKMSMNYSGSKSG
Ga0311301_1002584621F013101GGAMFLDGDAASTVVTFTYLQGPEASLTEFVHHLEVYLPLFRQLSEFRVLYLARVDLHFAKAKELFNALVAVPLGSDTSGELLRYFQIRKTWDLGRYGSLTEADLIFRNQAKMRFSGQRFEYLYRGWKVGSVTESSIVQEFGGSKHDVTVHFATEVLCRVGVPAQEPAGKE
Ga0311301_1002584623F087613N/AQGYLVTTGTALTCIEFSTAAQPQSRFRYLGDEMLASRDTYLLAFSQRPGEVTFTTVMAGTGGQETDMLTQGILWVDKSNFQILRMRSDLLAPNSEIRLDQLTTDVTLGEVRLQDVPNPLWLPSDANVYIEIGGQKYRNMHHYQDYRRYRVSVKIGNSH
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Biomedical Sciences Research Center "Alexander Fleming"
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