NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10041768

Scaffold Ga0311301_10041768


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10041768 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11010
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035066Metagenome173Y
F061159Metagenome132N
F065257Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1004176810F065257GAGMGESTSNEGSATTDGNALPNRDLPGVTRFKAAAAKRVQAHRSRRRLGLRCLTVRVSDHIVRHLISSGYLALESREATTSVAIALEAWIYDNVT
Ga0311301_100417687F061159GAGMCRSRQQVHRSCNRGRFHYPRIHMKRSVIGLVTAMTVTASVGQAADLKIENGPRFSITCTGVLETRNGIYFFNREKPITGLTPDDEIACWGASILPNDKGCWPMRGKSIEQILAVCPLAKTCQVAGVLKNLTHGLYCWTEVNSVIAK
Ga0311301_100417688F035066N/AMNNLTASVTLCVGLTLLATQTEAQHKTHSGIVRTQREYVRLAEVCAFGFWCDTGILNSNNPAPPRPLVAPKAKLARGIDRSQFRPEIASDPELVVKMTHMVFGEVGRHAPLPVKIIQLETAFNRAQARGQTLAHVLLSVKESLSDGYYAVDTYCAAAEPTLEEVETFEKTVLTAVLHGSNLSDVGYGPMTGNASADVATHQFAKGDPGYQLQAGDAYFREGPFINEFAEISPSTLFGLGGNNATSFGSFGAPFCTPGSAPIRRYCSVADVK
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