NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311301_10043383

Scaffold Ga0311301_10043383


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10043383 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10703
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001432Metagenome / Metatranscriptome696Y
F085014Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_100433835F001432AGGAGGMSLSKKYVRDGNRKIIGSITSGFSDTSSVVRDAHDQIAGRTSERFNTVRDAHGNLVSINTSEPGLLIGRKK
Ga0311301_100433836F085014GAGMSTRTTSPTETIECPLCSGMGELSRAAILDRLGVKDFARVAQLSAEEAFRMLQSKHDHESQTAWSRFDAEIAKRTADLTVRYKDEFRLAQSEKETLTRRVEDCLRELSQVRERNQELQAEMAKVARVGRKEELEFSDEAQTWAGIYVERITRNGDFLLAYRDPGGSPLQPAIVVDNKDKASVTESDLRKLIRDAKERHCPVGIIVAREESQLRQHDRERRWGQEDGGIWILRTTRAWLPRDLEILKPVCERMRTEGADFLQKNSMLAEEIRRTFVDLDEMEKELRKATKAIETACGLTVKYRARLQTLCDSAANTKIAPASHRDLDNSSTVNA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.