NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10086170

Scaffold Ga0311301_10086170


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10086170 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6357
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012896Metagenome / Metatranscriptome276Y
F017879Metagenome / Metatranscriptome238Y
F021618Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_100861701F017879GAGGMSKKLAMTPTIKSSNLSTPEKVACPKCDASLIFYRSNKPHIDECGFESYRFKCRACGSMLTGIIDPADDALLVTVSS
Ga0311301_1008617012F021618N/AMRDQTSEAFAYIEREYNDVKGRVELQRHVVAQLHRVEADAGEAEAALNALLDDETSKLRILDYLRRWLGDKPEEMPPVSST
Ga0311301_100861707F012896AGGAGGMSGTRREIATGLNESQVVRLFKCAVKDDGTLVDVIVEKLYGIMRDFDAGRAKKTVELIVDRDTAAASKFRALLDDLWSRGTSDLAA
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