NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10105935

Scaffold Ga0311301_10105935


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10105935 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5448
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001518Metagenome / Metatranscriptome679Y
F049029Metagenome147Y
F089921Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1010593511F049029GGAGVPLNEKNDPEMSYRRGYQDGALEMFRTVERSLDPPTRNAVQTWLEKDIDGWRLNGARDYPPTWRLTILKILK
Ga0311301_1010593512F089921GGAGGMSKERANDLARQCTEMVREGSNFPTVWSTLLKSHTLVEGIPRERFERDRSLLHIPLVTGEQLIFDSAVKEFRIQ
Ga0311301_101059356F001518AGGMGPALMSDDYKIYVDGGAPATLNDGAGISTDCATLQEAVLTWQRLTPEQKIRATVKLIGGPVYTAHQIARFHYETKQA
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