NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10145622

Scaffold Ga0311301_10145622


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10145622 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4314
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F004823Metagenome / Metatranscriptome422Y
F010114Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_101456222F004823AGGAGMYVTKAVNGVPAIQRDGQSVLSVCDRNWEFANWLCALLNELGQKSELLQNEQDWEWLNANDRAFRRVAQHA
Ga0311301_101456226F001596AGGAGMSWFHSSTAAVDARNYASPAEIVACFQDQRNVLGRLAFLITGDQATAEQAVGHACEMTLQGNSPFREWLFEWAKAATITSAISHGTEAIRICEAAHKDRRFPHVEHSSQGDAEERAASLDVILGADAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCHAMTWFHDRHVKAVEENHNASHAV
Ga0311301_101456227F010114GAGGMIIELNDDDTRLLHTVIIEQAQEHLSYADTSEVAERLCKLATRFERPVTELQT
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