Scaffold Ga0311301_10217669

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311301_10217669

Scaffold Ga0311301_10217669

Overview

Basic Information
Taxon OID	3300032160 Open in IMG/M
Scaffold ID	Ga0311301_10217669 Open in IMG/M
Source Dataset Name	Sb_50d combined assembly (MetaSPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3229
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium CG_4_9_14_3_um_filter_65_15	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.1318	Long. (^o)	11.881	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042445	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_102176691	F042445	AGG	MQLNKALPAKPRAATVAIGLAILAIAAAATTGCSQVHEKMFTLECAIGREPIAGELAPGTAMAIDVSTSPIPLITAPHRVIARCDNTGAVTMYLETPVDTGLSELSTPLSTAASHVTYAP

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