NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10227622

Scaffold Ga0311301_10227622


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10227622 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3126
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006672Metagenome / Metatranscriptome367Y
F015403Metagenome / Metatranscriptome255Y
F018460Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_102276221F015403AGGAGGMKFRQILIAIVILGTVWHTAAAQPKKKNIQPDAPPPESILAGTSMQSNPVLSDLTALKPERPLGPQDVLKSYEIAMSMVAEKT
Ga0311301_102276224F018460GGAGGMRRLIAVIGLCLLTFPALCQSTSKYQVAIITEVKPRQAAGDDASDPTSYDVSVKVGGTIYLVLYTQPLGELPAKYATGHELLVLVGKNTITYNDMLGQSLQVPIESQRPVAEPKQSK
Ga0311301_102276225F006672AGGAGMSTFDTLPGELNAHVISSIINLVCPQCGGRMSEFQCEGRCRRNWIAEWEWANYATRSSTSQGRRHDARSVR
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