NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10230470

Scaffold Ga0311301_10230470


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10230470 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3099
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037871Metagenome / Metatranscriptome167Y
F043794Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_102304703F037871N/AMKRTDEDQQFGVEFAKRLRPFYERALAEGQTEKGFARRLGVGRGGLQRYLKTGAMPSFRTIVLAHREFGIVIPYAGTESVSLVSGRGKRRRKTSALQMDLPLTIEALQGEIDIVVKKKSPQRIRLQLRAVKLG
Ga0311301_102304704F043794GAGGMAANQQARLAVELEYYVQHKAEWLAHKTGLYVVIKDSELLGFYPNFEAAYRAGAATYGLSADFLVKQILEHEPVFFVF
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