NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10246074

Scaffold Ga0311301_10246074


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10246074 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2959
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014771Metagenome260Y
F019704Metagenome228Y
F073304Metagenome120N
F093562Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_102460742F073304AGGAMATRSWHSRDFPGWRIWLISRLSRLRNIKNLAPGELTFAGGLVLLLAASILWRAFAMAMTGAGLVLILQEIVDPSPLFLAVPWEALEFVLSRKVRANHFWLHRTQGLLRESGASLARIDGCATREGFFLIGASFNETQIQWASRAAWRTTCQKPPEKEAATGCKTMKFLLALWLIAGGFAVLSLFRGVDLRSGLLLCGLCGAAGQLLASPAEKLLGPWAGRLASSNKETWPSRLDVESLAIPRFLWFKRSLVFHVRRTPAQESNEDQTR
Ga0311301_102460743F093562GAGGMSTRLRLLSEAEKRVSNPFLLCTLVSQRTLQLMMAGNPNTSTAQLVNSALNELIIGALEFERGGPRRALLIRAESGQQEIDGGLEAPRVPPVSRALSAEAP
Ga0311301_102460744F019704GGAGGMKMRIKVRDLMQRDGLRGEIVQLFHSRSAGMIHGDDGYDVTFNEESLVVGMSYGDLSLGLKVSYGIFFATGAKLPSAINVQPAVGGPTETTEDAGRAISTRAGVTGIV
Ga0311301_102460747F014771AGGAGMKARGSITQLLRNRRPGYILGEDGCLVAFDESSLQGLDPQELLVGDWVEYDELDPREGRRAATIKPLIQRAEE
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