NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10339461

Scaffold Ga0311301_10339461


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10339461 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2362
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005790Metagenome / Metatranscriptome390Y
F014041Metagenome / Metatranscriptome266Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_103394611F005790N/ACLVTILVFYLLLMPLAKRAAAESAEKAAQEKFSAELAKNPLEAQLESTKAALQTATQERDACKTRFDRQTILYDNTIVVDPSKTWIIPADVEPIAVGDHRVTYTYYDPKTKRETVHFHPQRQ
Ga0311301_103394612F014041N/AMQVDSEFAGLLVAVGFLVMGFVSMPIATGFVLGAIALGVVVALLLRFSPKKFTRVAVGTVIILAAVSLWWEGRKPRRPHTVSSNALYVLPNNVPFTLHKTGYWLDCWFDKQANVDRCKLTDEKGAGSFEDVFLPCVGQTPLPQGELVFNTRWTGQIWTRSPGKGINAPVVHLENGQVLLPQSFYAEAKRDAACSP
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