NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10355054

Scaffold Ga0311301_10355054


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10355054 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2289
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002448Metagenome / Metatranscriptome558Y
F007212Metagenome / Metatranscriptome355Y
F010139Metagenome / Metatranscriptome308Y
F070324Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_103550543F007212N/AMSDWPTIDAAVNAIMQETFGEPVVYQSVQAGFAAGDPVSITAIRHARVREESGAFANVEEISVNPTDLPNFPQRGDWVTAWGSQFVVTTVRQTDPYGLVELSLMARAGQVPND
Ga0311301_103550544F002448AGGMINPKTILAEWVTALQALPHLLEALGGDGDSIQFYTENAIVFGQPTRNNIRLAILSMPPGSVMIAWQGSGPGRLGNALVFVHDFSLYLHAPEEADVGYEDLFNWIVNDIPAGGSLRMLHTQVDPNCEPMDFYLPSARRNTVVISPDGATFEYFEVPVRLIESYNP
Ga0311301_103550545F010139AGGAMTADLVFLESPQGDEIKEVEATAEKLSPFLAQGWHQIPAPAGHKPSSVQEEK
Ga0311301_103550546F070324AGGAGGMANINELMNGWGFGKQTAIGTANTVATIWRHTNLNTKPWAKVPVNEDDRAEI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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