NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_11018144

Scaffold Ga0311301_11018144


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_11018144 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1092
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001323Metagenome / Metatranscriptome722Y
F025552Metagenome / Metatranscriptome201Y
F071428Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_110181441F071428N/AAPTIANHLAFEADARTVRTQAHTILTTRTLLPTHNRAAYQRMLKDFITVANLLQPGPGYGTTPQDYTAWYTALKASNITIW
Ga0311301_110181443F001323GAGGVTSPSQSASSQPPTAASPETVAVPQHPLHALTTYELRDYRRQLERAIAFFDTKNPVPPARDHLQARLDAVLAEQEDRVRLAAHA
Ga0311301_110181444F025552N/AAMLCQDWGSAYRITRTPRAARPYQAERRDDRVVLTAADPGTLRHLVRAEYLARPVPREAA
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