NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_11726644

Scaffold Ga0311301_11726644


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_11726644 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)751
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057590Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_117266441F057590GAGGVHIRPDFEWFAHSLVPSHASAYVGSESDHRADNGTTKCPESLCPILALPLSGRRGPPPARTLLPGHGSYRLIRQSRSALPYFGLSLVRGVSAGCDQPLLPTGPSRRYLCESFLGCLGPCHGGSAECICLFLPPRHRPSPVHYRGRLPACPRQNDFMTDPFFETAAISLCSGPQVCSPPRSFLPLRLIAAGQPRFLRPSAAEVRADLKRLKRERDSARI
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