NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1000523

Scaffold Ga0272424_1000523


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1000523 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)78914
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (4.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F064254Metagenome128Y
F083460Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100052311F083460N/AMQLRMKSSDSQAYFDALFELNASLIEYAMRHRLHELLSHHLNHEESQDNSENNDENKAAEAV
Ga0272424_10005234F005901N/ALHSYTSIYKLFEHLKEIYNELNKNXKCHRKYNALRQADKSFNVFYFNFMKLFSYLEYNDCTLINDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERCIIIIKVTVISDKRVTFLSVTTLIIDYVKSIIFSISEFNRAKSSIICYICKTSSHLFKNCSQNKINISTSQAFTLRLHEIVILENKENEKMSFKNNETKN
Ga0272424_100052346F064254N/AMQELYKLVSFLLFLSFIXLFNNVTVXNXFSMLVESIIXMIIVIMLMISRSFLKFVIFSSHCIVFCFTFHLKHVNKMCLINIXSLLHLHIIIATSSTHLSCRNXLKSIFLMHSCISNALXDFAXSLCRCRCXXVISDVKYQKXAALNLFLQTTLYICLICFCMSISHVIISVRXCLISDRDNSYTLSIILFAASFLSTSAYSVIQCNFSVTS
Ga0272424_10005235F000597GAGVTFIKDAMKDVLISSMTSMSNDSFASESLTIECVLSSNEISYLLKSLIDTEAANYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFNDHYAKKLIIHVIYLNLTVQDHMIDTASMLITRLNQHQMILRKTXMNKI
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Institute for Fundamental Biomedical Research
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